STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF3B2Splicing factor 3b subunit 2. (555 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
   
 0.999
SF3B4
Splicing factor 3b subunit 4.
   
 0.999
SF3B3
Splicing factor 3b subunit 3.
   
 0.998
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.998
SF3A2
Splicing factor 3a subunit 2.
   
 0.997
SF3A3
Splicing factor 3a subunit 3.
   
 0.997
PHF5A
PHD finger protein 5A.
    
 0.996
SNRPA1
LRRcap domain-containing protein.
   
 0.995
SF3A1
Splicing factor 3a subunit 1.
   
 0.994
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide.
    
 0.994
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.