WH47_06282 protein (Habropoda laboriosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WH47_06282

Uncharacterized protein. (51 aa)

Predicted Functional Partners:

WH47_07489

0.935

WH47_05922

0.769

WH47_11004

0.758

WH47_07508

0.758

WH47_09576

0.735

WH47_03046

0.734

WH47_02388

0.730

WH47_04409

0.714

WH47_06989

0.689

WH47_05330

0.685

Your Current Organism:

Habropoda laboriosa

NCBI taxonomy Id: 597456
Other names: H. laboriosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WH47_02388	WH47_06282	A0A0L7QZT7	A0A0L7QSH1	E3 ubiquitin-protein ligase RNF123.	Uncharacterized protein.	0.730
WH47_03046	WH47_04409	A0A0L7QT91	A0A0L7QR90	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Ubiquitin-40S ribosomal protein S27a.	0.976
WH47_03046	WH47_06282	A0A0L7QT91	A0A0L7QSH1	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.734
WH47_03046	WH47_07508	A0A0L7QT91	A0A0L7RG06	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Polyubiquitin-A.	0.928
WH47_03046	WH47_09576	A0A0L7QT91	A0A0L7RDX4	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Ubiquitin-60S ribosomal protein L40.	0.974
WH47_03046	WH47_11004	A0A0L7QT91	A0A0L7REF9	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Polyubiquitin-A.	0.928
WH47_04409	WH47_03046	A0A0L7QR90	A0A0L7QT91	Ubiquitin-40S ribosomal protein S27a.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.976
WH47_04409	WH47_05330	A0A0L7QR90	A0A0L7QUM7	Ubiquitin-40S ribosomal protein S27a.	E3 ubiquitin-protein ligase SMURF2.	0.971
WH47_04409	WH47_05922	A0A0L7QR90	A0A0L7REJ8	Ubiquitin-40S ribosomal protein S27a.	TNF receptor-associated factor 6.	0.980
WH47_04409	WH47_06282	A0A0L7QR90	A0A0L7QSH1	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.714
WH47_04409	WH47_07489	A0A0L7QR90	A0A0L7RFZ6	Ubiquitin-40S ribosomal protein S27a.	Putative ATP-dependent RNA helicase DHX34.	0.962
WH47_04409	WH47_07508	A0A0L7QR90	A0A0L7RG06	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin-A.	0.970
WH47_04409	WH47_09576	A0A0L7QR90	A0A0L7RDX4	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin-60S ribosomal protein L40.	0.999
WH47_04409	WH47_11004	A0A0L7QR90	A0A0L7REF9	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin-A.	0.970
WH47_05330	WH47_04409	A0A0L7QUM7	A0A0L7QR90	E3 ubiquitin-protein ligase SMURF2.	Ubiquitin-40S ribosomal protein S27a.	0.971
WH47_05330	WH47_05922	A0A0L7QUM7	A0A0L7REJ8	E3 ubiquitin-protein ligase SMURF2.	TNF receptor-associated factor 6.	0.944
WH47_05330	WH47_06282	A0A0L7QUM7	A0A0L7QSH1	E3 ubiquitin-protein ligase SMURF2.	Uncharacterized protein.	0.685
WH47_05330	WH47_07508	A0A0L7QUM7	A0A0L7RG06	E3 ubiquitin-protein ligase SMURF2.	Polyubiquitin-A.	0.892
WH47_05330	WH47_09576	A0A0L7QUM7	A0A0L7RDX4	E3 ubiquitin-protein ligase SMURF2.	Ubiquitin-60S ribosomal protein L40.	0.968
WH47_05330	WH47_11004	A0A0L7QUM7	A0A0L7REF9	E3 ubiquitin-protein ligase SMURF2.	Polyubiquitin-A.	0.892