STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
himA-9Bacterial nucleoid DNA-binding protein; Paralog group containing: PA0330, PA0397. (95 aa)    
Predicted Functional Partners:
dnaA
Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
    
 
 0.750
csp
Cold shock protein, similar to Csp of Bacteriophage bIL312.
  
 
 0.738
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
  
   0.731
nusA
Transcription elongation factor; Participates in both transcription termination and antitermination.
   
   0.705
tufB
Conserved hypothetical protein, fragment; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.563
trxA
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.521
polA
DNA polymerase I.
   
 
 0.493
PA0394
Conserved hypothetical protein; Paralog group containing: PA0311,PA0332, PA0394.
       0.469
#pseudo
Putative RNA polymerase sigma factor,fragment.
       0.469
PA0396
Conserved hypothetical protein; Paralog group containing: PA0045,PA0200, PA0208, PA0232, PA0245, PA0319,PA0334, PA0378, PA0420, PA0434, PA0740,PA0802.
       0.469
Your Current Organism:
Phytoplasma australiense
NCBI taxonomy Id: 59748
Other names: Australian grapevine yellows phytoplasma, C. Phytoplasma australiense, Candidatus Phytoplasma australiense
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