STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selAL-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (448 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
  
 0.986
selB
Selenocysteine-specific translation elongation factor; Identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475.
  
 0.978
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.935
NAMH_1292
Conserved hypothetical protein; Identified by match to protein family HMM PF01206; match to protein family HMM TIGR03527; Belongs to the sulfur carrier protein TusA family.
 
  
 0.733
NAMH_1323
Hypothetical protein; Identified by glimmer; putative.
       0.557
NAMH_0239
Putative Trk system potassium uptake protein TrkA; Identified by match to protein family HMM PF02254.
   
    0.439
NAMH_1089
Putative TrkA-N; Identified by match to protein family HMM PF02254.
   
    0.439
NAMH_1090
TrkA-N:Ion transport protein; Identified by match to protein family HMM PF00520; match to protein family HMM PF02254; match to protein family HMM PF07885.
   
    0.439
NAMH_1581
TrkA; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885.
   
    0.439
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
       0.410
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.