APBB3 protein (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APBB3

Amyloid beta precursor protein binding family B member 3. (438 aa)

Predicted Functional Partners:

APP

0.646

CD44

0.560

BACH1

0.530

DLGAP5

0.509

BUB1

0.507

MRE11

0.491

TPX2

0.488

APLP2

0.476

BUB1B

0.454

RAD50

0.450

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APBB3	APLP2	ENSFALP00000009696	ENSFALP00000005092	Amyloid beta precursor protein binding family B member 3.	Amyloid beta precursor like protein 2.	0.476
APBB3	APP	ENSFALP00000009696	ENSFALP00000012506	Amyloid beta precursor protein binding family B member 3.	Amyloid beta precursor protein.	0.646
APBB3	BACH1	ENSFALP00000009696	ENSFALP00000006590	Amyloid beta precursor protein binding family B member 3.	BTB domain and CNC homolog 1.	0.530
APBB3	BUB1	ENSFALP00000009696	ENSFALP00000011989	Amyloid beta precursor protein binding family B member 3.	BUB1 mitotic checkpoint serine/threonine kinase.	0.507
APBB3	BUB1B	ENSFALP00000009696	ENSFALP00000001087	Amyloid beta precursor protein binding family B member 3.	Uncharacterized protein.	0.454
APBB3	CD44	ENSFALP00000009696	ENSFALP00000013055	Amyloid beta precursor protein binding family B member 3.	CD44 molecule (Indian blood group).	0.560
APBB3	DLGAP5	ENSFALP00000009696	ENSFALP00000003927	Amyloid beta precursor protein binding family B member 3.	DLG associated protein 5.	0.509
APBB3	MRE11	ENSFALP00000009696	ENSFALP00000000322	Amyloid beta precursor protein binding family B member 3.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.491
APBB3	RAD50	ENSFALP00000009696	ENSFALP00000014042	Amyloid beta precursor protein binding family B member 3.	Zinc-hook domain-containing protein.	0.450
APBB3	TPX2	ENSFALP00000009696	ENSFALP00000005765	Amyloid beta precursor protein binding family B member 3.	TPX2 microtubule nucleation factor.	0.488
APLP2	APBB3	ENSFALP00000005092	ENSFALP00000009696	Amyloid beta precursor like protein 2.	Amyloid beta precursor protein binding family B member 3.	0.476
APLP2	APP	ENSFALP00000005092	ENSFALP00000012506	Amyloid beta precursor like protein 2.	Amyloid beta precursor protein.	0.526
APP	APBB3	ENSFALP00000012506	ENSFALP00000009696	Amyloid beta precursor protein.	Amyloid beta precursor protein binding family B member 3.	0.646
APP	APLP2	ENSFALP00000012506	ENSFALP00000005092	Amyloid beta precursor protein.	Amyloid beta precursor like protein 2.	0.526
APP	CD44	ENSFALP00000012506	ENSFALP00000013055	Amyloid beta precursor protein.	CD44 molecule (Indian blood group).	0.449
BACH1	APBB3	ENSFALP00000006590	ENSFALP00000009696	BTB domain and CNC homolog 1.	Amyloid beta precursor protein binding family B member 3.	0.530
BUB1	APBB3	ENSFALP00000011989	ENSFALP00000009696	BUB1 mitotic checkpoint serine/threonine kinase.	Amyloid beta precursor protein binding family B member 3.	0.507
BUB1	BUB1B	ENSFALP00000011989	ENSFALP00000001087	BUB1 mitotic checkpoint serine/threonine kinase.	Uncharacterized protein.	0.997
BUB1	DLGAP5	ENSFALP00000011989	ENSFALP00000003927	BUB1 mitotic checkpoint serine/threonine kinase.	DLG associated protein 5.	0.948
BUB1	TPX2	ENSFALP00000011989	ENSFALP00000005765	BUB1 mitotic checkpoint serine/threonine kinase.	TPX2 microtubule nucleation factor.	0.829