STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPM6AGlycoprotein M6A. (278 aa)    
Predicted Functional Partners:
SYNPR
Synaptoporin.
   
 
 0.706
SCN3B
Sodium voltage-gated channel beta subunit 3.
   
  
 0.694
SNCA
Alpha-synuclein; Belongs to the synuclein family.
   
 
 0.693
GABRE
Gamma-aminobutyric acid type A receptor epsilon subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
  
 0.691
KCNC1
Potassium voltage-gated channel subfamily C member 1; Belongs to the potassium channel family.
   
  
 0.682
MBP
Myelin basic protein.
   
 
 0.524
ERMN
Uncharacterized protein.
   
  
 0.513
UPK1B
Tetraspanin.
   
  
 0.476
CLCN3
Chloride channel protein.
   
  
 0.454
ANKRD10
Ankyrin repeat domain 10.
      
 0.453
Your Current Organism:
Ficedula albicollis
NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.