Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TSIB_1142 | cmk | TSIB_1142 | TSIB_0316 | Ribonucleotide reductase alpha subunit; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Cytidylate kinase. | 0.904 |
TSIB_1142 | ndk | TSIB_1142 | TSIB_0535 | Ribonucleotide reductase alpha subunit; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.933 |
TSIB_1276 | cmk | TSIB_1276 | TSIB_0316 | Deoxycytidylate deaminase. | Cytidylate kinase. | 0.900 |
TSIB_1276 | surE | TSIB_1276 | TSIB_1475 | Deoxycytidylate deaminase. | 5'-nucleotidase surE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.900 |
TSIB_1949 | cmk | TSIB_1949 | TSIB_0316 | Carbohydrate/pyrimidine kinase, PfkB family. | Cytidylate kinase. | 0.901 |
TSIB_1949 | surE | TSIB_1949 | TSIB_1475 | Carbohydrate/pyrimidine kinase, PfkB family. | 5'-nucleotidase surE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.903 |
cmk | TSIB_1142 | TSIB_0316 | TSIB_1142 | Cytidylate kinase. | Ribonucleotide reductase alpha subunit; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.904 |
cmk | TSIB_1276 | TSIB_0316 | TSIB_1276 | Cytidylate kinase. | Deoxycytidylate deaminase. | 0.900 |
cmk | TSIB_1949 | TSIB_0316 | TSIB_1949 | Cytidylate kinase. | Carbohydrate/pyrimidine kinase, PfkB family. | 0.901 |
cmk | ndk | TSIB_0316 | TSIB_0535 | Cytidylate kinase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.922 |
cmk | rpl14e | TSIB_0316 | TSIB_0317 | Cytidylate kinase. | 50S ribosomal protein L14e; Belongs to the eukaryotic ribosomal protein eL14 family. | 0.950 |
cmk | rpl22 | TSIB_0316 | TSIB_0293 | Cytidylate kinase. | 50S ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.873 |
cmk | rpl34e | TSIB_0316 | TSIB_0315 | Cytidylate kinase. | 50S ribosomal protein L34e; Belongs to the eukaryotic ribosomal protein eL34 family. | 0.955 |
cmk | rpl4 | TSIB_0316 | TSIB_0289 | Cytidylate kinase. | 50S ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.867 |
cmk | surE | TSIB_0316 | TSIB_1475 | Cytidylate kinase. | 5'-nucleotidase surE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.900 |
cmk | truB | TSIB_0316 | TSIB_0337 | Cytidylate kinase. | Probable tRNA pseudouridine synthase B; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.916 |
ndk | TSIB_1142 | TSIB_0535 | TSIB_1142 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | Ribonucleotide reductase alpha subunit; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.933 |
ndk | cmk | TSIB_0535 | TSIB_0316 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | Cytidylate kinase. | 0.922 |
ndk | rpl22 | TSIB_0535 | TSIB_0293 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 50S ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.698 |
rpl14e | cmk | TSIB_0317 | TSIB_0316 | 50S ribosomal protein L14e; Belongs to the eukaryotic ribosomal protein eL14 family. | Cytidylate kinase. | 0.950 |
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