Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TSIB_1010 | TSIB_2019 | TSIB_1010 | TSIB_2019 | CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Pyrophosphorylase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.480 |
TSIB_1010 | TSIB_2020 | TSIB_1010 | TSIB_2020 | CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase. | 0.728 |
TSIB_1010 | ribL | TSIB_1010 | TSIB_1332 | CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Glycerol-3-phosphate cytidyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.556 |
TSIB_1333 | TSIB_1334 | TSIB_1333 | TSIB_1334 | RNA-binding protein, containing PUA domain. | Hypothetical protein. | 0.822 |
TSIB_1333 | TSIB_1335 | TSIB_1333 | TSIB_1335 | RNA-binding protein, containing PUA domain. | Pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain. | 0.586 |
TSIB_1333 | ribL | TSIB_1333 | TSIB_1332 | RNA-binding protein, containing PUA domain. | Glycerol-3-phosphate cytidyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.818 |
TSIB_1334 | TSIB_1333 | TSIB_1334 | TSIB_1333 | Hypothetical protein. | RNA-binding protein, containing PUA domain. | 0.822 |
TSIB_1334 | TSIB_1335 | TSIB_1334 | TSIB_1335 | Hypothetical protein. | Pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain. | 0.621 |
TSIB_1334 | TSIB_1336 | TSIB_1334 | TSIB_1336 | Hypothetical protein. | Putative tRNA-binding protein. | 0.405 |
TSIB_1334 | ribL | TSIB_1334 | TSIB_1332 | Hypothetical protein. | Glycerol-3-phosphate cytidyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.783 |
TSIB_1335 | TSIB_1333 | TSIB_1335 | TSIB_1333 | Pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain. | RNA-binding protein, containing PUA domain. | 0.586 |
TSIB_1335 | TSIB_1334 | TSIB_1335 | TSIB_1334 | Pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain. | Hypothetical protein. | 0.621 |
TSIB_1335 | TSIB_1336 | TSIB_1335 | TSIB_1336 | Pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain. | Putative tRNA-binding protein. | 0.499 |
TSIB_1335 | ribL | TSIB_1335 | TSIB_1332 | Pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain. | Glycerol-3-phosphate cytidyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.613 |
TSIB_1336 | TSIB_1334 | TSIB_1336 | TSIB_1334 | Putative tRNA-binding protein. | Hypothetical protein. | 0.405 |
TSIB_1336 | TSIB_1335 | TSIB_1336 | TSIB_1335 | Putative tRNA-binding protein. | Pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain. | 0.499 |
TSIB_1336 | ribL | TSIB_1336 | TSIB_1332 | Putative tRNA-binding protein. | Glycerol-3-phosphate cytidyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.462 |
TSIB_1569 | ribL | TSIB_1569 | TSIB_1332 | Transaminase. | Glycerol-3-phosphate cytidyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.599 |
TSIB_1823 | TSIB_2019 | TSIB_1823 | TSIB_2019 | Dolichol-phosphate mannosyltransferase, fused to membrane-bound GtrA- like domain. | Pyrophosphorylase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.545 |
TSIB_1823 | TSIB_2020 | TSIB_1823 | TSIB_2020 | Dolichol-phosphate mannosyltransferase, fused to membrane-bound GtrA- like domain. | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase. | 0.482 |
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