Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TSIB_1151 | argS | TSIB_1151 | TSIB_1925 | Thioredoxin reductase. | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.609 |
TSIB_1151 | cysS | TSIB_1151 | TSIB_0174 | Thioredoxin reductase. | Cysteinyl-tRNA synthetase. | 0.558 |
TSIB_1151 | hisS | TSIB_1151 | TSIB_0079 | Thioredoxin reductase. | Histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.591 |
TSIB_1151 | pheS | TSIB_1151 | TSIB_0616 | Thioredoxin reductase. | Phenylalanyl-tRNA synthetase alpha chain; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily. | 0.524 |
TSIB_1151 | serS | TSIB_1151 | TSIB_1397 | Thioredoxin reductase. | Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.755 |
TSIB_1151 | valS | TSIB_1151 | TSIB_0968 | Thioredoxin reductase. | Valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 2 subfamily. | 0.611 |
argS | TSIB_1151 | TSIB_1925 | TSIB_1151 | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Thioredoxin reductase. | 0.609 |
argS | cysS | TSIB_1925 | TSIB_0174 | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Cysteinyl-tRNA synthetase. | 0.751 |
argS | glyS | TSIB_1925 | TSIB_0954 | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). | 0.785 |
argS | hisS | TSIB_1925 | TSIB_0079 | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.795 |
argS | pheS | TSIB_1925 | TSIB_0616 | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Phenylalanyl-tRNA synthetase alpha chain; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily. | 0.736 |
argS | pyrG | TSIB_1925 | TSIB_1359 | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.896 |
argS | serS | TSIB_1925 | TSIB_1397 | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.805 |
argS | trpS | TSIB_1925 | TSIB_1964 | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.722 |
argS | tyrS | TSIB_1925 | TSIB_0224 | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily. | 0.810 |
argS | valS | TSIB_1925 | TSIB_0968 | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 2 subfamily. | 0.811 |
cysS | TSIB_1151 | TSIB_0174 | TSIB_1151 | Cysteinyl-tRNA synthetase. | Thioredoxin reductase. | 0.558 |
cysS | argS | TSIB_0174 | TSIB_1925 | Cysteinyl-tRNA synthetase. | Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.751 |
cysS | glyS | TSIB_0174 | TSIB_0954 | Cysteinyl-tRNA synthetase. | Glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). | 0.734 |
cysS | hisS | TSIB_0174 | TSIB_0079 | Cysteinyl-tRNA synthetase. | Histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.799 |
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