Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TSIB_0731 | TSIB_1107 | TSIB_0731 | TSIB_1107 | Hypothetical protein. | Rio1 protein, putative. | 0.999 |
TSIB_0731 | rnp3 | TSIB_0731 | TSIB_1191 | Hypothetical protein. | Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. | 0.999 |
TSIB_0731 | rnp4 | TSIB_0731 | TSIB_1398 | Hypothetical protein. | Ribonuclease P protein component 4; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. | 0.999 |
TSIB_0731 | rpl7ae | TSIB_0731 | TSIB_0419 | Hypothetical protein. | 50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.999 |
TSIB_0731 | rps11 | TSIB_0731 | TSIB_0341 | Hypothetical protein. | 30S ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.999 |
TSIB_0731 | rps4 | TSIB_0731 | TSIB_0340 | Hypothetical protein. | 30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
TSIB_0731 | rps5 | TSIB_0731 | TSIB_0309 | Hypothetical protein. | 30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. | 0.999 |
TSIB_1107 | TSIB_0731 | TSIB_1107 | TSIB_0731 | Rio1 protein, putative. | Hypothetical protein. | 0.999 |
TSIB_1107 | rnp3 | TSIB_1107 | TSIB_1191 | Rio1 protein, putative. | Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. | 0.918 |
TSIB_1107 | rnp4 | TSIB_1107 | TSIB_1398 | Rio1 protein, putative. | Ribonuclease P protein component 4; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. | 0.859 |
TSIB_1107 | rpl7ae | TSIB_1107 | TSIB_0419 | Rio1 protein, putative. | 50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.823 |
TSIB_1107 | rps11 | TSIB_1107 | TSIB_0341 | Rio1 protein, putative. | 30S ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.999 |
TSIB_1107 | rps4 | TSIB_1107 | TSIB_0340 | Rio1 protein, putative. | 30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
TSIB_1107 | rps5 | TSIB_1107 | TSIB_0309 | Rio1 protein, putative. | 30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. | 0.999 |
TSIB_1399 | rnp4 | TSIB_1399 | TSIB_1398 | Hypothetical protein. | Ribonuclease P protein component 4; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. | 0.818 |
rnp1 | rnp2 | TSIB_0297 | TSIB_1353 | Ribonuclease P protein component 1; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. | Ribonuclease P protein component 2; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family. | 0.854 |
rnp1 | rnp3 | TSIB_0297 | TSIB_1191 | Ribonuclease P protein component 1; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. | Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. | 0.833 |
rnp1 | rnp4 | TSIB_0297 | TSIB_1398 | Ribonuclease P protein component 1; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. | Ribonuclease P protein component 4; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. | 0.996 |
rnp1 | rpl7ae | TSIB_0297 | TSIB_0419 | Ribonuclease P protein component 1; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. | 50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.644 |
rnp1 | rps5 | TSIB_0297 | TSIB_0309 | Ribonuclease P protein component 1; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. | 30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. | 0.765 |
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