STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMNB1Lamin B1; Belongs to the intermediate filament family. (586 aa)    
Predicted Functional Partners:
LMNA
Lamin A/C; Belongs to the intermediate filament family.
    
0.992
LMNB2
Lamin B2; Belongs to the intermediate filament family.
   
0.981
CASP6
Caspase 6; Belongs to the peptidase C14A family.
   
 0.957
EMD
Emerin.
    
 0.938
GZMB
Granzyme B; Belongs to the peptidase S1 family.
    
 0.903
BANF1
Barrier to autointegration factor 1.
   
 0.847
LBR
Lamin B receptor.
   
 
 0.784
SUN1
Sad1 and UNC84 domain containing 1.
    
 0.758
TMPO
Uncharacterized protein.
   
 0.755
SYNE2
Spectrin repeat containing nuclear envelope protein 2.
    
 0.740
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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