Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HTH_0157 | HTH_0632 | HTH_0157 | HTH_0632 | Cytochrome c. | Cytochrome c. | 0.919 |
HTH_0157 | HTH_1456 | HTH_0157 | HTH_1456 | Cytochrome c. | Oxidoreductase molybdopterin binding. | 0.505 |
HTH_0157 | cyc | HTH_0157 | HTH_0988 | Cytochrome c. | Cytochrome c-552; Reacts with hydrogenase; Belongs to the cytochrome c family. | 0.915 |
HTH_0157 | nosZ | HTH_0157 | HTH_0163 | Cytochrome c. | Nitrous oxide reductase. | 0.871 |
HTH_0157 | sorA | HTH_0157 | HTH_0806 | Cytochrome c. | Sulfite:cytochrome c oxidoreductase subunit A. | 0.505 |
HTH_0632 | HTH_0157 | HTH_0632 | HTH_0157 | Cytochrome c. | Cytochrome c. | 0.919 |
HTH_0632 | HTH_1456 | HTH_0632 | HTH_1456 | Cytochrome c. | Oxidoreductase molybdopterin binding. | 0.505 |
HTH_0632 | cyc | HTH_0632 | HTH_0988 | Cytochrome c. | Cytochrome c-552; Reacts with hydrogenase; Belongs to the cytochrome c family. | 0.902 |
HTH_0632 | nosZ | HTH_0632 | HTH_0163 | Cytochrome c. | Nitrous oxide reductase. | 0.492 |
HTH_0632 | sorA | HTH_0632 | HTH_0806 | Cytochrome c. | Sulfite:cytochrome c oxidoreductase subunit A. | 0.505 |
HTH_1456 | HTH_0157 | HTH_1456 | HTH_0157 | Oxidoreductase molybdopterin binding. | Cytochrome c. | 0.505 |
HTH_1456 | HTH_0632 | HTH_1456 | HTH_0632 | Oxidoreductase molybdopterin binding. | Cytochrome c. | 0.505 |
HTH_1456 | cyc | HTH_1456 | HTH_0988 | Oxidoreductase molybdopterin binding. | Cytochrome c-552; Reacts with hydrogenase; Belongs to the cytochrome c family. | 0.505 |
HTH_1456 | soxA1 | HTH_1456 | HTH_1517 | Oxidoreductase molybdopterin binding. | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | 0.489 |
ccmC | cyc | HTH_0064 | HTH_0988 | Cytochrome c biogenesis protein. | Cytochrome c-552; Reacts with hydrogenase; Belongs to the cytochrome c family. | 0.676 |
ccpR | cyc | HTH_1104 | HTH_0988 | Cytochrome c peroxidase. | Cytochrome c-552; Reacts with hydrogenase; Belongs to the cytochrome c family. | 0.713 |
ccpR | def2 | HTH_1104 | HTH_0465 | Cytochrome c peroxidase. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.672 |
cyc | HTH_0157 | HTH_0988 | HTH_0157 | Cytochrome c-552; Reacts with hydrogenase; Belongs to the cytochrome c family. | Cytochrome c. | 0.915 |
cyc | HTH_0632 | HTH_0988 | HTH_0632 | Cytochrome c-552; Reacts with hydrogenase; Belongs to the cytochrome c family. | Cytochrome c. | 0.902 |
cyc | HTH_1456 | HTH_0988 | HTH_1456 | Cytochrome c-552; Reacts with hydrogenase; Belongs to the cytochrome c family. | Oxidoreductase molybdopterin binding. | 0.505 |
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