Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| nirS | soxA1 | HTH_0150 | HTH_1517 | Cytochrome cd1 nitrite reductase. | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | 0.863 |
| nirS | soxA2 | HTH_0150 | HTH_1518 | Cytochrome cd1 nitrite reductase. | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | 0.863 |
| nirS | soxX | HTH_0150 | HTH_1519 | Cytochrome cd1 nitrite reductase. | Sulfur oxidation protein; Cytochrome c. | 0.698 |
| nirS | sreA | HTH_0150 | HTH_1746 | Cytochrome cd1 nitrite reductase. | Sulfur reductase subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.810 |
| nirS | sreB | HTH_0150 | HTH_1741 | Cytochrome cd1 nitrite reductase. | Sulfur reductase subunit B. | 0.526 |
| sat | soxA1 | HTH_0447 | HTH_1517 | Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | 0.920 |
| sat | soxA2 | HTH_0447 | HTH_1518 | Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | 0.920 |
| sat | soxB | HTH_0447 | HTH_1520 | Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. | Sulfur oxidation protein; Belongs to the 5'-nucleotidase family. | 0.900 |
| sat | soxX | HTH_0447 | HTH_1519 | Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. | Sulfur oxidation protein; Cytochrome c. | 0.900 |
| sat | soxY | HTH_0447 | HTH_1515 | Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. | Sulfur oxidation protein. | 0.904 |
| sat | soxZ | HTH_0447 | HTH_1516 | Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. | Sulfur oxidation protein. | 0.903 |
| sat | sreA | HTH_0447 | HTH_1746 | Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. | Sulfur reductase subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.904 |
| sat | sreB | HTH_0447 | HTH_1741 | Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. | Sulfur reductase subunit B. | 0.909 |
| sat | sreC | HTH_0447 | HTH_1740 | Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. | Sulfur reductase subunit C. | 0.900 |
| soxA1 | nirS | HTH_1517 | HTH_0150 | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | Cytochrome cd1 nitrite reductase. | 0.863 |
| soxA1 | sat | HTH_1517 | HTH_0447 | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. | 0.920 |
| soxA1 | soxA2 | HTH_1517 | HTH_1518 | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | 0.969 |
| soxA1 | soxB | HTH_1517 | HTH_1520 | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | Sulfur oxidation protein; Belongs to the 5'-nucleotidase family. | 0.992 |
| soxA1 | soxX | HTH_1517 | HTH_1519 | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | Sulfur oxidation protein; Cytochrome c. | 0.992 |
| soxA1 | soxY | HTH_1517 | HTH_1515 | Diheme cytochrome c; C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation. | Sulfur oxidation protein. | 0.992 |
page 1 of 5