A0A1Y1W6R4 protein (Linderina pennispora) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1W6R4

Uncharacterized protein. (180 aa)

Predicted Functional Partners:

A0A1Y1VWC1

0.533

A0A1Y1W2P2

0.533

A0A1Y1W2S9

0.533

A0A1Y1W3K2

0.533

A0A1Y1WD93

0.523

A0A1Y1WIP3

0.473

A0A1Y1W443

0.424

A0A1Y1WMG9

0.404

Your Current Organism:

Linderina pennispora

NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1VWC1	A0A1Y1W443	Uncharacterized protein.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.844
A0A1Y1VWC1	A0A1Y1W6R4	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1Y1W2P2	A0A1Y1W443	Uncharacterized protein.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.844
A0A1Y1W2P2	A0A1Y1W6R4	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1Y1W2S9	A0A1Y1W443	Uncharacterized protein.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.844
A0A1Y1W2S9	A0A1Y1W6R4	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1Y1W3K2	A0A1Y1W443	DUF229-domain-containing protein.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.844
A0A1Y1W3K2	A0A1Y1W6R4	DUF229-domain-containing protein.	Uncharacterized protein.	0.533
A0A1Y1W443	A0A1Y1VWC1	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.844
A0A1Y1W443	A0A1Y1W2P2	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.844
A0A1Y1W443	A0A1Y1W2S9	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.844
A0A1Y1W443	A0A1Y1W3K2	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	DUF229-domain-containing protein.	0.844
A0A1Y1W443	A0A1Y1W6R4	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.424
A0A1Y1W443	A0A1Y1WD93	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Calreticulin-domain-containing protein.	0.972
A0A1Y1W443	A0A1Y1WIP3	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]	0.643
A0A1Y1W443	A0A1Y1WMG9	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Glycoside hydrolase.	0.702
A0A1Y1W6R4	A0A1Y1VWC1	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1Y1W6R4	A0A1Y1W2P2	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1Y1W6R4	A0A1Y1W2S9	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1Y1W6R4	A0A1Y1W3K2	Uncharacterized protein.	DUF229-domain-containing protein.	0.533