STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1W727Putative VPS21-Rab5-like GTPase. (253 aa)    
Predicted Functional Partners:
A0A1Y1W4Q0
FYVE-type domain-containing protein.
   
 0.933
A0A1Y1WNA8
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.929
A0A1Y1W8K6
Phosphatidylinositol 3-kinase VPS34.
    
 0.911
A0A1Y1W5S6
AN1-type domain-containing protein.
   
 0.877
A0A1Y1WG42
VPS9 domain-containing protein.
    
 0.872
A0A1Y1VQK4
Uncharacterized protein.
    
 0.859
A0A1Y1WF36
Uncharacterized protein.
    
 0.859
A0A1Y1WL74
P-loop containing nucleoside triphosphate hydrolase protein.
  
0.855
A0A1Y1W9A8
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
 
  
 0.843
A0A1Y1W4T3
Ras-domain-containing protein.
  
0.839
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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