STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1WFK5Uncharacterized protein. (658 aa)    
Predicted Functional Partners:
A0A1Y1W067
Sas10 domain-containing protein.
   
   0.965
A0A1Y1W8S7
Bystin-domain-containing protein.
   
 
 0.934
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
   0.908
A0A1Y1WN01
RNA-binding domain-containing protein.
   
 
 0.905
A0A1Y1W476
Nop-domain-containing protein.
   
   0.903
A0A1Y1WDN1
Brix-domain-containing protein.
   
    0.892
A0A1Y1W670
TRAUB-domain-containing protein.
   
 
 0.891
SPB1
AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
    0.890
A0A1Y1WMI1
U3 small nucleolar RNA-associated protein 22.
   
 
 0.873
A0A1Y1WKG9
WD40 repeat-like protein.
   
 
 0.864
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
Server load: low (18%) [HD]