STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT04200.1phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (435 aa)    
Predicted Functional Partners:
SIT04180.1
acyl-CoA thioesterase.
 
 
 0.980
SIT00473.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 
 
 0.972
SIT00440.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
 
  
 0.969
SIT00454.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
 
 0.967
SIT00463.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 
 
 0.926
SIT00431.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.903
SIS75206.1
aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A.
    
  0.785
SIS55724.1
Ferredoxin-NADP reductase.
  
 
 0.780
SIS94531.1
Hypothetical protein.
  
 
 0.779
gatA
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
  0.710
Your Current Organism:
Neptunomonas antarctica
NCBI taxonomy Id: 619304
Other names: CCTCC AB 209086, KACC 14056, N. antarctica, Neptunomonas antarctica Zhang et al. 2010, Neptunomonas sp. S3-22, strain S3-22
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