STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_09024HIV Tat specific factor 1. (517 aa)    
Predicted Functional Partners:
EGR_03212
Putative ATP-dependent RNA helicase DDX46.
   
 0.955
EGR_03864
Splicing factor 3B subunit 2.
   
 
 0.907
EGR_08769
Splicing factor 3A subunit 2.
   
 
 0.901
EGR_07152
Splicing factor 3B subunit.
    
 
 0.892
EGR_07151
Splicing factor 3B subunit.
    
 
 0.892
EGR_01483
Crooked neck pre mRNA splicing factor 1.
   
 
 0.890
EGR_06776
U2 small nuclear ribonucleoprotein A.
    
 
 0.885
EGR_02847
Splicing factor 3B subunit 3.
    
 
 0.866
EGR_03805
Putative small nuclear ribonucleoprotein F.
   
   0.833
EGR_02792
Splicing factor 3A subunit.
    
 
 0.807
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.