STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_08512Collagen alpha-1(IV) chain. (1751 aa)    
Predicted Functional Partners:
EGR_03922
Integrin beta.
    
 0.947
EGR_02877
Telomerase protein component.
    
 0.602
EGR_08391
Leucine-rich repeat serine/threonine-protein kinase.
    
 0.596
EGR_08390
Leucine-rich repeat serine/threonine-protein kinase.
    
 0.596
EGR_06122
Histone-lysine N-methyltransferase eggless.
   
 0.518
EGR_06093
Transcription initiation factor TFIID subunit 5.
    
 0.465
EGR_00840
WD repeat, SAM and U-box domain-containing protein.
    
 0.465
EGR_01961
Metalloendopeptidase.
    
 0.464
EGR_08367
SAGA-associated factor.
    
 0.451
EGR_02599
Transcriptional adapter 3.
    
 0.450
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.