STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_04274RBR-type E3 ubiquitin transferase. (633 aa)    
Predicted Functional Partners:
EGR_00906
Ubiquitin-conjugating enzyme E2 L3.
   
 0.806
EGR_08548
Putative E3 ubiquitin-protein ligase TRIP12.
   
 
 0.785
EGR_00625
Ubiquitin.
    
  0.771
EGR_03441
RBR-type E3 ubiquitin transferase.
    
 0.764
EGR_01284
NEDD8 protein.
    
 0.674
EGR_06107
Ubiquitin.
    
 0.656
EGR_00261
40S ribosomal protein S27a.
    
 0.656
EGR_02761
AN1-type zinc finger and ubiquitin domain-containing protein.
   
 0.632
EGR_00280
Ubiquitin C.
    
 0.602
EGR_00281
Polyubiquitin.
    
 0.602
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.