STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG00524Protein CBG00524. (764 aa)    
Predicted Functional Partners:
folt-1
Protein CBR-FOLT-1.
   
  
 0.663
CBG17305
Protein CBG17305.
  
  
 
0.607
glp-4
Protein CBR-VARS-2; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.531
pld-1
Phospholipase.
    
 0.502
aps-2
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.488
apb-1
AP complex subunit beta.
    
 0.482
dpy-23
Protein CBR-DPY-23; Belongs to the adaptor complexes medium subunit family.
     
 0.478
metr-1
Probable methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate (By similarity).
     
 0.442
CBG15622
Protein CBG15622.
     
 0.418
snx-6
Protein CBR-SNX-6.
     
 0.415
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.