STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cho-1Protein CBR-CHO-1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (570 aa)    
Predicted Functional Partners:
prdh-1
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
  
  
 0.834
cha-1
Protein CBR-CHA-1; Belongs to the carnitine/choline acetyltransferase family.
   
  
 0.756
alh-13
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
     
 0.687
unc-3
Protein CBR-UNC-3.
   
  
 0.687
lim-4
Protein CBR-LIM-4.
      
 0.661
glr-5
Protein CBR-GLR-5.
      
 0.642
lim-6
Protein CBR-LIM-6.
      
 0.635
ace-2
Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.
      
 0.634
glr-4
Protein CBR-GLR-4.
      
 0.632
eat-4
Protein CBR-EAT-4.
      
 0.625
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.