STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col-124Protein CBR-COL-124. (291 aa)    
Predicted Functional Partners:
bed-3
Protein CBR-BED-3.
   
  
 0.744
col-140
Protein CBR-COL-140.
   
    0.737
nas-10
Protein CBR-NAS-10.
    
 0.714
ham-3
Protein CBR-SWSN-2.1.
    
 
 0.684
nas-36
Zinc metalloproteinase nas-36; Mtalloprotease. Involved in molting, a process during larval stages in which a new cuticle is formed and the old cuticle is shed.
    
 0.667
ptr-8
Protein CBR-PTR-8.
      
 0.643
blmp-1
Protein CBR-BLMP-1.
      
 0.640
ldb-1
Protein CBR-LDB-1.
      
 0.632
col-119
Protein CBR-COL-119.
  
   
0.615
col-8
Protein CBR-COL-8.
  
   
0.512
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.