STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stam-1Protein CBR-STAM-1. (471 aa)    
Predicted Functional Partners:
hgrs-1
Protein CBR-HGRS-1.
   
0.999
CBG15030
Protein CBG15030.
   
 0.971
ubq-1
Protein CBR-UBQ-1.
   
 0.958
mvb-12
Protein CBR-MVB-12.
    
 0.955
usp-50
Protein CBG05585; Belongs to the peptidase C19 family.
    
 0.945
ubl-1
Ubiquitin-like protein 1-40S ribosomal protein S27a; In the N-terminal section; belongs to the ubiquitin family.
   
 0.942
vps-36
Protein CBR-VPS-36.
     
 0.927
vps-28
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex, a regulator of vesicular trafficking process.
     
 0.926
ehs-1
Protein CBR-EHS-1.
    
 0.925
tsg-101
Protein CBG15029.
   
 0.924
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.