STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG05231Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family. (166 aa)    
Predicted Functional Partners:
CBG11828
Protein CBG11828.
   
 0.979
smo-1
Small ubiquitin-related modifier.
   
 0.979
npp-9
Protein CBR-NPP-9.
   
 0.967
npp-11
Protein CBR-NPP-11.
    
 0.937
CBG16850
Protein CBG16850; Belongs to the ubiquitin-conjugating enzyme family.
  
  
 
0.905
ubc-9
Protein CBR-UBC-9; Belongs to the ubiquitin-conjugating enzyme family.
  
  
 
0.900
uba-2
SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.
   
 0.891
ran-2
Protein CBR-RAN-2.
   
 0.881
aos-1
Protein CBR-AOS-1.
  
 0.874
gei-17
Protein CBR-GEI-17.
    
 0.864
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.