STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
laat-1Protein CBG07028. (310 aa)    
Predicted Functional Partners:
ctns-1
Cystinosin homolog; Thought to transport cystine out of lysosomes. May play a role in the degradation of engulfed apoptotic cells (By similarity). Belongs to the cystinosin family.
    
 
 0.746
rnst-2
Protein CBG17875; Belongs to the RNase T2 family.
      
 0.743
CBG00875
Protein CBG00875.
      
 0.644
CBG24287
Protein CBG24287.
      
 0.642
scav-3
Protein CBR-SCAV-3; Belongs to the CD36 family.
      
 0.642
CBG23800
Protein CBG23800.
   
  
 0.641
CBG24620
Protein CBG24620.
   
  
 0.641
lmp-2
Protein CBR-LMP-2.
      
 0.633
lgg-1
Protein lgg.
      
 0.627
cpl-1
Protein CBR-CPL-1; Belongs to the peptidase C1 family.
      
 0.603
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.