STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mans-3alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (589 aa)    
Predicted Functional Partners:
mans-2
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
  
 
0.937
mans-1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
  
 
0.935
aagr-4
Protein CBG08162; Belongs to the glycosyl hydrolase 31 family.
   
 
 0.923
aagr-3
Protein CBG19359; Belongs to the glycosyl hydrolase 31 family.
   
 
 0.923
mans-4
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
  
  
 
0.902
Cbr-srw-84
Protein CBR-SRW-84.
   
  
 0.649
cpsf-1
Probable cleavage and polyadenylation specificity factor subunit 1; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction (By similarity).
   
  
 0.644
nhr-61
Protein CBR-NHR-61.
      
 0.642
srsx-34
Protein CBR-SRSX-34.
      
 0.642
kin-14
Tyrosine-protein kinase.
      
 0.639
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.