STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
unc-25Protein CBR-UNC-25. (510 aa)    
Predicted Functional Partners:
gta-1
Protein CBR-GTA-1; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.970
cdo-1
Cysteine dioxygenase; Belongs to the cysteine dioxygenase family.
     
 0.960
alh-4
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.955
unc-47
Protein CBR-UNC-47.
   
 
 0.953
gdh-1
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.952
unc-10
Protein CBR-UNC-10.
   
 0.949
alh-6
Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.932
alh-9
Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family.
   
 0.932
alh-12
Protein CBR-ALH-12.
   
 0.932
alh-11
Protein CBR-ALH-11; Belongs to the aldehyde dehydrogenase family.
   
 0.932
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.