STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpn-13Protein CBG19693. (375 aa)    
Predicted Functional Partners:
rpn-10
Protein CBR-RPN-10.
   
 0.994
rpt-1
Protein CBR-RPT-1; Belongs to the AAA ATPase family.
   
 0.992
rpn-12
Protein CBR-RPN-12.
   
 0.991
rpn-3
Protein CBR-RPN-3.
   
 0.991
rpt-5
Protein CBR-RPT-5; Belongs to the AAA ATPase family.
   
 0.990
rpn-9
Protein CBR-RPN-9.
   
 0.988
rpn-5
Protein CBR-RPN-5.
   
 0.987
rpn-7
Protein CBR-RPN-7.
   
 0.986
rpt-4
Protein CBR-RPT-4; Belongs to the AAA ATPase family.
   
 0.984
rpt-3
Protein CBR-RPT-3; Belongs to the AAA ATPase family.
   
 0.981
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.