STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpg-3Chondroitin proteoglycan 3. (262 aa)    
Predicted Functional Partners:
gna-2
Glucosamine 6-phosphate N-acetyltransferase; Belongs to the acetyltransferase family. GNA1 subfamily.
   
 
 0.800
cpg-4
Chondroitin proteoglycan 4.
   
  
 0.763
CBG23672
Protein CBG23672.
   
 
 0.753
CBG17809
Protein CBG17809.
      
 0.744
clec-87
C-type lectin domain-containing protein 87.
   
 0.678
rme-2
Protein CBR-RME-2.
   
  
 0.659
clec-91
Protein CBR-CLEC-91.
   
 0.651
rsp-2
Protein CBR-RSP-2.
    
 
 0.650
ucr-2.1
Protein CBR-UCR-2.1.
   
 
 0.648
cpg-7
Chondroitin proteoglycan 7.
      
 0.644
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.