STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhr-14Protein CBR-NHR-14. (440 aa)    
Predicted Functional Partners:
pqn-21
Protein CBR-PQN-21.
      
 0.634
clec-150
Protein CBR-CLEC-150.
      
 0.626
nlp-11
Protein CBR-NLP-11.
      
 0.527
ptp-4
Protein CBG03399.
   
  
 0.508
bed-1
Protein CBG20523.
      
 0.499
lin-17
Protein CBR-LIN-17; Belongs to the G-protein coupled receptor Fz/Smo family.
  
     0.494
gei-8
Protein CBR-GEI-8.
    
 0.494
rpl-9
Protein CBR-RPL-9.
    
 0.472
lin-44
Abnormal cell lineage protein 44; Ligand for members of the frizzled family of seven transmembrane receptors (By similarity). Affects male tail development, vulval precursor cell specification and egg laying. Involved in morphogenesis by influencing polarity of asymmetric cell divisions of the B, U, and F cells in the male, and the T cell in males and hermaphrodites. Controls spindle orientation in B-gamma cell division during male copulatory spicule development. Involved in specification of the P7.p lineage during vulval development. Has a role in providing polarity and default lin-17 [...]
  
     0.472
rbm-22
Protein CBG17615.
    
 
 0.453
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.