STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcr-1Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily. (2030 aa)    
Predicted Functional Partners:
rde-4
Protein CBR-RDE-4.
    
 0.997
alg-1
Protein CBR-ALG-1; Belongs to the argonaute family.
   
 0.889
stau-1
Protein CBG08071.
    
 0.868
pash-1
Protein CBR-PASH-1.
   
 0.848
rde-1
Protein CBR-RDE-1.
   
 0.819
mrps-9
Protein CBR-MRPS-9.
   
 
 0.806
mrpl-13
Protein CBR-MRPL-13.
   
 
 0.799
mrpl-19
Protein CBR-MRPL-19.
  
 
 0.789
mrpl-17
Protein CBR-MRPL-17.
   
 
 0.785
drh-3
Protein CBR-DRH-3.
   
 
0.781
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.