STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG25649Protein CBG25649. (160 aa)    
Predicted Functional Partners:
ech-4
Protein CBR-ECH-4.
   
 0.750
maoc-1
Protein CBR-MAOC-1.
   
 0.653
ech-8
Protein CBR-ECH-8.
   
 0.625
acox-3
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.596
acds-10
Protein CBG09328.
   
 
 0.584
CBG12007
Protein CBG12007; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.583
CBG16141
Protein CBG16141.
   
 0.582
prx-5
Protein CBR-PRX-5.
    
 0.559
CBG24395
Protein CBG24395.
    
 0.559
ech-5
Protein CBR-ECH-5; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.546
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.