STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col-149Col_cuticle_N domain-containing protein. (297 aa)    
Predicted Functional Partners:
ssq-2
Sperm-Specific family, class Q.
   
 
 0.728
ssp-34
Sperm-specific class P protein 34.
   
  
 0.670
ssq-4
Sperm-Specific family, class Q.
   
 
 0.656
cyp-33A1
CYtochrome P450 family; Belongs to the cytochrome P450 family.
    
 
 0.647
cyp-23A1
CYtochrome P450 family; Belongs to the cytochrome P450 family.
    
 
 0.645
cyp-33C5
CYtochrome P450 family; Belongs to the cytochrome P450 family.
    
 
 0.588
ssq-1
Sperm-Specific family, class Q.
   
 
 0.584
cyp-33C12
CYtochrome P450 family.
    
 
 0.578
msp-77
Major sperm protein 77/79; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.
   
 
 0.576
cyp-33C1
CYtochrome P450 family; Belongs to the cytochrome P450 family.
    
 
 0.555
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.