STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0024.11Putative pseudouridine synthase B0024.11. (577 aa)    
Predicted Functional Partners:
Y67D2.4
CP-type G domain-containing protein.
   
   0.840
mrpl-13
Mitochondrial Ribosomal Protein, Large.
   
   0.839
mrpl-24
Probable 39S ribosomal protein L24, mitochondrial.
   
   0.837
mrpl-17
Mitochondrial Ribosomal Protein, Large.
  
   0.831
mrpl-11
Probable 39S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family.
   
   0.829
mrpl-21
Mitochondrial Ribosomal Protein, Large.
  
   0.828
mrpl-34
L51_S25_CI-B8 domain-containing protein.
   
   0.827
mrps-18C
Putative 39S ribosomal protein L3, mitochondrial.
   
   0.823
mtcu-1
TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
   0.817
K12H4.2
Uncharacterized protein K12H4.2; Belongs to the Iojap/RsfS family.
   
   0.817
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.