STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
math-1MATH domain-containing protein. (186 aa)    
Predicted Functional Partners:
hlh-25
BHLH domain-containing protein.
      
 0.698
lin-22
BHLH domain-containing protein.
      
 0.696
ref-1
REgulator of Fusion.
   
  
 0.670
nhr-249
NR LBD domain-containing protein.
   
    0.569
math-49
MATH (Meprin-associated Traf homology) domain containing.
   
   
0.557
Y53F4B.21
Uncharacterized protein.
   
    0.551
lin-32
Protein lin-32; Essential for the specification of the neuroblast cell fate in the development of peripheral sense organs. Its role in the generation of sensory neurons may be through positively regulating the expression of the zinc finger protein ztf-11 during postdeirid neurogenesis.
      
 0.549
B0507.5
Uncharacterized protein.
   
    0.547
sru-4
Serpentine Receptor, class U.
   
    0.546
twk-4
TWiK family of potassium channels; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
   
    0.546
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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