STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0395.3Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family. (614 aa)    
Predicted Functional Partners:
maoc-1
MAO-C-like dehydratase domain.
   
 
 0.907
unc-17
Vesicular acetylcholine transporter unc-17; Involved in acetylcholine transport into synaptic vesicles. Belongs to the major facilitator superfamily. Vesicular transporter family.
 
 
  
 0.867
icl-1
Bifunctional glyoxylate cycle protein; In the C-terminal section; belongs to the malate synthase family.
   
  
 0.807
dif-1
Protein dif-1; Seems to play a role in the maintenance of tissue differentiation in the developing embryo, but not for its initiation.
   
 
 0.758
cts-1
Probable citrate synthase, mitochondrial.
   
 
 0.664
dhs-6
SCP2 domain-containing protein.
   
 
 0.621
dhs-28
SCP2 domain-containing protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.598
acs-19
Acetyl-coenzyme A synthetase.
   
  
 0.567
acox-1.1
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 
 0.565
fbp-1
FBPase domain-containing protein; Belongs to the FBPase class 1 family.
   
  
 0.560
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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