STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0454.5Uncharacterized protein. (198 aa)    
Predicted Functional Partners:
ttr-3
Transthyretin-like protein 3.
   
  
 0.850
rsp-4
Probable splicing factor, arginine/serine-rich 4; May play a functionally redundant role in embryogenesis. Belongs to the splicing factor SR family.
      
 0.808
Y43C5A.3
Uncharacterized protein.
   
  
 0.768
nlp-25
Neuropeptide-Like Protein.
      
 0.699
nspe-1
Nematode Specific Peptide family, group E.
      
 0.696
col-49
Col_cuticle_N domain-containing protein.
      
 0.693
kin-10
Casein kinase II subunit beta; Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Modulates two aspects of male mating behavior; response to hermaphrodite contact and vulval location, acting in the same pathway as lov-1 and pkd-2; Belongs to the casein kinase 2 subunit beta family.
      
 0.618
hog-1
HOG only (Hedgehog Hog domain alone).
      
 0.549
C18A11.4
Uncharacterized protein.
   
  
 0.493
F25E5.2
Uncharacterized protein.
      
 0.469
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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