STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0496.1BTB domain-containing protein. (297 aa)    
Predicted Functional Partners:
H06I04.5
Protein-tyrosine-phosphatase.
   
    0.536
W01B6.6
Uncharacterized protein.
   
    0.473
C53B4.2
Uncharacterized protein.
   
    0.455
R08A2.2
Serine/threonine-protein phosphatase.
   
    0.455
ZK666.8
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
    0.454
ZK945.6
Uncharacterized protein ZK945.6.
   
    0.446
C17C3.9
Uncharacterized protein.
   
    0.440
F40G12.10
Uncharacterized protein.
   
    0.437
T02E1.7
Uncharacterized protein T02E1.7; Belongs to the SURF4 family.
   
    0.436
Y47D9A.5
Uncharacterized protein.
   
    0.433
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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