STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cln-3.2Battenin. (435 aa)    
Predicted Functional Partners:
aman-1
Alpha-mannosidase.
      
 0.912
cln-3.3
Battenin.
  
  
0.912
cln-3.1
Battenin.
  
  
0.910
Y71G12B.10
Pyruvate carboxyltransferase domain-containing protein.
 
 
    0.881
C33G3.4
Probable beta-mannosidase; Belongs to the glycosyl hydrolase 2 family.
      
 0.808
ppt-1
Palmitoyl-protein thioesterase 1; Removes thioester-linked fatty acyl groups such as palmitate from modified cysteine residues in proteins or peptides.
    
 
 0.797
cup-15
Coelomocyte uptake defective protein 15; Modulates the transport of substances from the endosomal to lysosomal compartments. Plays a role in lysosome formation and function in coelomocytes.
   
  
 0.765
sul-3
Sulfatase domain-containing protein.
 
    
 0.733
clh-6
Chloride channel protein.
   
  
 0.718
asm-1
Sphingomyelin phosphodiesterase 1; Converts sphingomyelin to ceramide. Belongs to the acid sphingomyelinase family.
      
 0.709
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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