STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnh-1.3RNase H domain-containing protein. (139 aa)    
Predicted Functional Partners:
col-87
COLlagen.
      
 0.901
col-158
Col_cuticle_N domain-containing protein.
      
 0.816
rnh-2
Ribonuclease H2 subunit A; Catalytic subunit of RNase HII, an endonuclease that specifically degrades the RNA of RNA:DNA hybrids. Participates in DNA replication, possibly by mediating the removal of lagging-strand Okazaki fragment RNA primers during DNA replication. Mediates the excision of single ribonucleotides from DNA:RNA duplexes (By similarity).
  
 
 0.771
col-72
COLlagen.
      
 0.746
col-38
Col_cuticle_N domain-containing protein.
      
 0.699
col-17
COLlagen.
      
 0.697
col-49
Col_cuticle_N domain-containing protein.
      
 0.694
col-176
Col_cuticle_N domain-containing protein.
      
 0.693
pals-26
Protein containing ALS2cr12 (ALS2CR12) signature.
   
  
 0.670
F15D4.5
Uncharacterized protein.
   
  
 0.626
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.