STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpo-9BTB domain-containing protein. (581 aa)    
Predicted Functional Partners:
ubxn-1
UBX domain-containing protein 1; Ubiquitin-binding protein which acts as an adapter for ATPase cdc-48.1 and/or cdc-48.2, conferring substrate specificity. Together with ubxn-2 and ubxn-3, plays a role in hermaphrodite spermatogenesis probably by promoting the degradation of sex determination terminal factor tra-1.
   
   0.922
mrps-18C
Putative 39S ribosomal protein L3, mitochondrial.
   
 
 0.911
mrpl-23
Probable 39S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.909
Y55F3BL.4
SRR1 domain-containing protein.
   
 
 0.908
mrpl-22
Mitochondrial Ribosomal Protein, Large; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.903
mrpl-19
Probable 39S ribosomal protein L19, mitochondrial.
   
 
 0.900
mrpl-47
Mitochondrial Ribosomal Protein, Large.
   
 
 0.897
mrpl-4
Mitochondrial Ribosomal Protein, Large.
   
 
 0.897
mrpl-34
L51_S25_CI-B8 domain-containing protein.
   
   0.891
mrpl-2
Ribosomal_L2_C domain-containing protein.
   
 
 0.889
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.