STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
txdc-9Thioredoxin domain-containing protein 9; Required for normal microtubule organization and function. Regulates tubulin acetylation in ALM and PLM neurons. (208 aa)    
Predicted Functional Partners:
rmd-6
Regulator of Microtubule Dynamics.
      
 0.690
cab-1
Protein cab-1.
      
 0.661
C28H8.4
ER lumen protein-retaining receptor erd-2.2; Required for the retention of luminal endoplasmic reticulum proteins. Determines the specificity of the luminal ER protein retention system. Also required for normal vesicular traffic through the Golgi (By similarity); Belongs to the ERD2 family.
   
  
 0.621
mrps-17
28S ribosomal protein S17, mitochondrial; Belongs to the universal ribosomal protein uS17 family.
   
    0.591
C08B6.8
Probable oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.
   
    0.563
T02H6.11
Uncharacterized protein.
   
  
 0.558
rmd-2
TPR_REGION domain-containing protein.
   
  
 0.556
rmd-3
Regulator of Microtubule Dynamics.
      
 0.547
sqv-3
Xylosylprotein 4-beta-galactosyltransferase; Glycosyltransferase required for the biosynthesis of the tetrasaccharide (GlcA-Gal-Gal-Xyl-)Ser core linker of heparan sulfate and chondroitin sulfate. Required for embryonic development. Involved in vulval epithelium invagination ; Belongs to the glycosyltransferase 7 family.
   
  
 0.546
mrpl-30
Mitochondrial Ribosomal Protein, Large.
   
  
 0.546
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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