STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amt-1Putative ammonium transporter 1; Involved in the uptake of ammonia; Belongs to the ammonia transporter channel (TC 1.A.11.2) family. (534 aa)    
Predicted Functional Partners:
ctsa-1
Serine carboxypeptidase ctsa-4.1; Belongs to the peptidase S10 family.
     
 0.709
clec-51
C-type LECtin.
   
  
 0.703
gst-42
Probable maleylacetoacetate isomerase.
   
 
 0.703
F58G6.3
Uncharacterized protein.
   
  
 0.700
Y34F4.1
Uncharacterized protein.
   
  
 0.700
C49C3.4
Uncharacterized protein.
      
 0.697
F09B12.3
Putative phospholipase B-like 2; Putative phospholipase; Belongs to the phospholipase B-like family.
      
 0.697
T28F3.8
Uncharacterized protein.
      
 0.697
F56F10.1
Putative serine protease F56F10.1; Belongs to the peptidase S28 family.
      
 0.696
Y105C5B.15
Purple acid phosphatase.
      
 0.695
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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