STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf-1RING-type domain-containing protein. (381 aa)    
Predicted Functional Partners:
Y14H12B.2
SPK domain-containing protein.
   
   0.593
Y54G9A.5
Uncharacterized protein.
   
    0.578
R02F2.4
Uncharacterized protein.
   
   0.561
T28A8.4
Uncharacterized protein.
   
    0.543
Y49F6B.9
RBR-type E3 ubiquitin transferase.
   
   0.543
ZC434.8
Probable arginine kinase ZC434.8.
   
   0.541
fubl-4
FUBp (FUBP) Like.
   
   0.538
T22D1.5
Uncharacterized protein.
   
    0.538
C29A12.1
Uncharacterized protein.
   
    0.536
F58A4.2
Uncharacterized protein F58A4.2.
   
    0.535
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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