STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clh-5Chloride channel protein. (797 aa)    
Predicted Functional Partners:
clc-2
Clc-like protein 2; Belongs to the Clc family.
      
 0.700
best-24
Bestrophin homolog 24; Forms chloride channels.
      
 0.700
best-13
Bestrophin homolog 13; Forms chloride channels.
      
 0.697
eef-1G
Probable elongation factor 1-gamma; Probably plays a role in anchoring the complex to other cellular components.
  
  
 0.691
C24H11.1
Serine/threonine-protein phosphatase.
   
  
 0.633
esyt-2
C2 domain-containing protein.
   
  
 0.541
T28H10.3
Uncharacterized protein.
   
 
 0.515
clh-6
Chloride channel protein.
   
 
0.507
chil-3
Glyco_18 domain-containing protein.
      
 0.467
lgc-55
Ligand-Gated ion Channel; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
      
 0.461
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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