STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C08E8.2Str_synth domain-containing protein. (338 aa)    
Predicted Functional Partners:
crn-3
HRDC domain-containing protein.
   
 
 0.781
tsfm-1
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.723
enol-1
Enolase; Belongs to the enolase family.
  
 
 0.705
hpo-31
Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
 0.704
F46B6.6
Tr-type G domain-containing protein.
  
  
 0.694
iffb-1
Eukaryotic translation initiation factor eIF5B.
  
  
 0.694
mrpl-20
Mitochondrial Ribosomal Protein, Large.
  
  
 0.673
let-716
Uncharacterized protein.
  
  
 0.669
C48B6.2
Putative 40S ribosomal protein S4-like.
  
  
 0.664
rps-9
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
  
  
 0.664
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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