STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C08F1.6Uncharacterized protein. (253 aa)    
Predicted Functional Partners:
fbxc-28
F-box C protein.
   
  
 0.813
sdz-10
SKN-1 Dependent Zygotic transcript.
   
  
 0.808
fbxb-62
F-box domain-containing protein.
   
  
 0.790
sdz-28
SKN-1 Dependent Zygotic transcript.
   
  
 0.771
clec-266
C-type lectin domain-containing protein.
   
  
 0.769
ZK1053.4
Uncharacterized protein.
   
  
 0.763
C46C2.5
Uncharacterized protein.
   
  
 0.706
C24D10.2
Uncharacterized protein.
      
 0.694
C34D4.3
MSP domain-containing protein.
      
 0.694
C34F11.2
Uncharacterized protein.
      
 0.694
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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