STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clc-1CLaudin-like in Caenorhabditis. (182 aa)    
Predicted Functional Partners:
F52E1.5
Uncharacterized protein.
   
  
 0.718
hic-1
Uncharacterized protein.
   
  
 0.708
srh-100
Serpentine Receptor, class H.
      
 0.700
sedl-1
Probable trafficking protein particle complex subunit 2; May play a role in vesicular transport from endoplasmic reticulum to Golgi. Required for the systemic spread of the RNAi response; Belongs to the TRAPP small subunits family. Sedlin subfamily.
      
 0.700
F10A3.1
Uncharacterized protein.
      
 0.699
clc-2
Clc-like protein 2; Belongs to the Clc family.
      
 0.691
T02E1.7
Uncharacterized protein T02E1.7; Belongs to the SURF4 family.
      
 0.663
dct-17
CUB_2 domain-containing protein.
   
  
 0.620
lys-1
Lysozyme-like protein 1; Involved in resistance to Gram-negative bacterium S.marcescens and to bacterium Gram-positive S.aureus infection.
   
  
 0.577
K10D6.2
Uncharacterized protein.
      
 0.549
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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