STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl-42Ribosomal Protein, Large subunit. (142 aa)    
Predicted Functional Partners:
C16C8.18
Uncharacterized protein.
   
    0.443
C18H7.7
Uncharacterized protein.
   
    0.441
F42A9.7
Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.
   
    0.441
C18H7.4
Tyrosine-protein kinase.
   
    0.435
Y71G12B.3
Uncharacterized protein.
   
    0.428
comp-1
Protein kinase domain-containing protein.
   
    0.426
Y47G6A.26
Uncharacterized protein.
   
    0.424
F21F3.2
Protein kinase domain-containing protein.
   
    0.422
decr-1.3
Probable 2,4-dienoyl-CoA reductase 3; Auxiliary enzyme of beta-oxidation. It participates in the metabolism of unsaturated fatty enoyl-CoA esters having double bonds in both even- and odd-numbered positions. Catalyzes the NADP-dependent reduction of 2,4-dienoyl-CoA to yield trans-3-enoyl-CoA. Belongs to the short-chain dehydrogenases/reductases (SDR) family. 2,4-dienoyl-CoA reductase subfamily.
   
    0.422
C08F11.10
Uncharacterized protein.
   
    0.420
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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